SRX026532
GSM589239: ERα sequencing in E2 (estradiol) treated T47D cells

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
ESR1

Cell type

Cell type Class
Breast
Cell type
T-47D
Primary Tissue
Breast
Tissue Diagnosis
Adenocarcinoma Ductal

Attributes by original data submitter

Sample

source_name
T47D breast cancer cells
cell line
T47D breast cancer cells
fraction
ChIP DNA
antibody manufacturer
Santa Cruz
antibody catalog number
sc-543
antibody
ERα
agent
ETOH (ethanol)

Sequenced DNA Library

library_name
GSM589239: ERα sequencing in E2 (estradiol) treated T47D cells
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg19

Number of total reads
22111638
Reads aligned (%)
58.1
Duplicates removed (%)
2.9
Number of peaks
2516 (qval < 1E-05)

hg38

Number of total reads
22111638
Reads aligned (%)
58.7
Duplicates removed (%)
2.0
Number of peaks
2388 (qval < 1E-05)

Base call quality data from DBCLS SRA