Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
ESR1

Cell type

Cell type Class
Breast
Cell type
T-47D
Primary Tissue
Breast
Tissue Diagnosis
Adenocarcinoma Ductal

Attributes by original data submitter

Sample

source_name
T47D breast cancer cells
cell line
T47D breast cancer cells
fraction
ChIP DNA
antibody manufacturer
Santa Cruz
antibody catalog number
sc-543
antibody
ERα
agent
ETOH (ethanol)

Sequenced DNA Library

library_name
GSM589238: ERα sequencing in ETOH (ethanol) treated T47D cells
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

hg19

Number of total reads
44523318
Reads aligned (%)
38.8
Duplicates removed (%)
3.9
Number of peaks
1299 (qval < 1E-05)

hg38

Number of total reads
44523318
Reads aligned (%)
39.7
Duplicates removed (%)
2.9
Number of peaks
1092 (qval < 1E-05)

Base call quality data from DBCLS SRA