Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
ESR1

Cell type

Cell type Class
Breast
Cell type
MCF-7
Primary Tissue
Breast
Site of Extraction
Pleura
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
MCF-7 breast cancer cells
cell line
MCF-7 breast cancer cells
fraction
ChIP DNA
antibody manufacturer
Santa Cruz
antibody catalog number
sc-543
antibody
ERα
agent
ETOH (ethanol)

Sequenced DNA Library

library_name
GSM589236: ERα sequencing in ETOH (ethanol) treated MCF-7 cells
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

hg19

Number of total reads
47942072
Reads aligned (%)
39.0
Duplicates removed (%)
3.6
Number of peaks
1370 (qval < 1E-05)

hg38

Number of total reads
47942072
Reads aligned (%)
39.9
Duplicates removed (%)
2.6
Number of peaks
986 (qval < 1E-05)

Base call quality data from DBCLS SRA