SRX026512
GSM579126: RAW-Tbp-ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Tbp

Cell type

Cell type Class
Blood
Cell type
RAW 264.7
Primary Tissue
Blood
Tissue Diagnosis
Leukemia

Attributes by original data submitter

Sample

source_name
RAW264.7 cells
cell type
RAW264.7 Macrophage cell line
chip antibody
TBP (Santa Cruz sc-204, LOT H0508)
treatment
none
transgenes
none
genetic background
wild-type

Sequenced DNA Library

library_name
GSM579126: RAW-Tbp-ChIP-Seq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
65840504
Reads aligned (%)
55.0
Duplicates removed (%)
55.7
Number of peaks
4120 (qval < 1E-05)

mm9

Number of total reads
65840504
Reads aligned (%)
54.8
Duplicates removed (%)
55.7
Number of peaks
4125 (qval < 1E-05)

Base call quality data from DBCLS SRA