SRX026265
GSM575226: GATA6 ChIP-seq in proliferating cells

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
GATA6

Cell type

Cell type Class
Digestive tract
Cell type
Caco-2
Primary Tissue
Colon
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
proliferating Caco-2 cells
cell type
human intestinal cell line
cell line
Caco-2
chip antibody
GATA6 (Santa Cruz 7244 and Santa Cruz 9055)

Sequenced DNA Library

library_name
GSM575226: GATA6 ChIP-seq in proliferating cells
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
10730359
Reads aligned (%)
81.3
Duplicates removed (%)
19.3
Number of peaks
8034 (qval < 1E-05)

hg19

Number of total reads
10730359
Reads aligned (%)
80.6
Duplicates removed (%)
20.5
Number of peaks
8233 (qval < 1E-05)

Base call quality data from DBCLS SRA