Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
Embyonic stem cells
treatment
normal culture condition
chip antibody
anti-H3
antibody catalog number
AB1791
antibody manufacturer
Abcam
cell type
V6.5 embryonic stem cells
genetic background
C57BL/6-129
antibody lot number
887601

Sequenced DNA Library

library_name
GSM587479: h3_mesc_ChipSeq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

mm10

Number of total reads
24016062
Reads aligned (%)
75.2
Duplicates removed (%)
6.4
Number of peaks
130 (qval < 1E-05)

mm9

Number of total reads
24016062
Reads aligned (%)
75.1
Duplicates removed (%)
6.4
Number of peaks
132 (qval < 1E-05)

Base call quality data from DBCLS SRA