Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Pluripotent stem cell
Cell type
iPS cells
NA
NA

Attributes by original data submitter

Sample

source_name
hiPS line PDB2lox_21
cell line
hiPS line PDB2lox_21
chip antibody
H3K4me3

Sequenced DNA Library

library_name
GSM575293: H3K4me3 hiPS PDB2lox_21
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg38

Number of total reads
8208670
Reads aligned (%)
67.4
Duplicates removed (%)
7.9
Number of peaks
28626 (qval < 1E-05)

hg19

Number of total reads
8208670
Reads aligned (%)
67.2
Duplicates removed (%)
8.0
Number of peaks
28620 (qval < 1E-05)

Base call quality data from DBCLS SRA