SRX026067
GSM575292: H3K4me3 hiPS PDB1lox 21puro 26

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Pluripotent stem cell
Cell type
iPS cells
NA
NA

Attributes by original data submitter

Sample

source_name
hiPS line PDB1lox_21puro_26
cell line
hiPS line PDB1lox_21puro_26
chip antibody
H3K4me3

Sequenced DNA Library

library_name
GSM575292: H3K4me3 hiPS PDB1lox_21puro_26
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
7507300
Reads aligned (%)
65.7
Duplicates removed (%)
7.3
Number of peaks
28780 (qval < 1E-05)

hg19

Number of total reads
7507300
Reads aligned (%)
65.5
Duplicates removed (%)
7.4
Number of peaks
28744 (qval < 1E-05)

Base call quality data from DBCLS SRA