SRX026065
GSM575290: H3K4me3 hiPS PDB1lox 17puro 5

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Pluripotent stem cell
Cell type
iPS cells
NA
NA

Attributes by original data submitter

Sample

source_name
hiPS line PDB1lox_17puro_5
cell line
hiPS line PDB1lox_17puro_5
chip antibody
H3K4me3

Sequenced DNA Library

library_name
GSM575290: H3K4me3 hiPS PDB1lox_17puro_5
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
7563052
Reads aligned (%)
69.0
Duplicates removed (%)
5.1
Number of peaks
30537 (qval < 1E-05)

hg19

Number of total reads
7563052
Reads aligned (%)
68.8
Duplicates removed (%)
5.2
Number of peaks
30481 (qval < 1E-05)

Base call quality data from DBCLS SRA