SRX026063
GSM575288: H3K4me3 hiPS C1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Pluripotent stem cell
Cell type
iPS cells
NA
NA

Attributes by original data submitter

Sample

source_name
hiPS line C1
cell line
hiPS line C1
chip antibody
H3K4me3

Sequenced DNA Library

library_name
GSM575288: H3K4me3 hiPS C1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
12685540
Reads aligned (%)
72.1
Duplicates removed (%)
10.2
Number of peaks
33947 (qval < 1E-05)

hg19

Number of total reads
12685540
Reads aligned (%)
71.8
Duplicates removed (%)
10.5
Number of peaks
33859 (qval < 1E-05)

Base call quality data from DBCLS SRA