ChIP-Atlas: SRX025485

Sample information curated by ChIP-Atlas

Antigen

Antigen Class: Unclassified
Antigen: Unclassified

Cell type

Cell type Class: Embryo
Cell type: 0-4h embryos
NA: NA

Attributes by original data submitter

Sample

source_name: E0-4h
developmental stage: E0-4h
fraction: input

Sequenced DNA Library

library_name: GSM570050: CBP_INPUT_1
library_strategy: ChIP-Seq
library_source: GENOMIC
library_selection: ChIP

Sequencing Platform

instrument_model: Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

dm6

Number of total reads: 16322948
Reads aligned (%): 93.2
Duplicates removed (%): 26.4
Number of peaks: 9356 (qval < 1E-05)

dm3

Number of total reads: 16322948
Reads aligned (%): 94.3
Duplicates removed (%): 24.3
Number of peaks: 1584 (qval < 1E-05)

Base call quality data from DBCLS SRA