SRX025476
GSM570040: 3dFemale ChIPSeq 1 and 2

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
GFP

Cell type

Cell type Class
Adult
Cell type
Adult female
NA
NA

Attributes by original data submitter

Sample

source_name
7T
developmental stage
3dFemale from 7T
fraction
ChIP
antibody name
NWG-GFP
manufacturer
White Lab/Chemicon

Sequenced DNA Library

library_name
GSM570040: 3dFemale_ChIPSeq_1 and 2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

dm6

Number of total reads
57927180
Reads aligned (%)
84.4
Duplicates removed (%)
61.2
Number of peaks
8169 (qval < 1E-05)

dm3

Number of total reads
57927180
Reads aligned (%)
84.5
Duplicates removed (%)
59.6
Number of peaks
7608 (qval < 1E-05)

Base call quality data from DBCLS SRA