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Install and launch IGV before selecting data to visualize
For dm6
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For dm3
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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Analyze
For dm6
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For dm3
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For dm6
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For dm3
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Sin3A
wikigenes
PDBj
CellType: 0-12h embryos
ATCC
MeSH
RIKEN BRC
SRX025462
GSM569791: Sin3A ChIPSeq 1 and 2
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
Sin3A
Cell type
Cell type Class
Embryo
Cell type
0-12h embryos
NA
NA
Attributes by original data submitter
Sample
source_name
E0-12h
developmental stage
E0-12h
fraction
ChIP
antibody name
Sin3A
manufacturer
Ross Cagan/Proteintech
Sequenced DNA Library
library_name
GSM569791: Sin3A_ChIPSeq_1 and 2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer
Where can I get the processing logs?
Read processing pipeline
log
dm6
Number of total reads
17878115
Reads aligned (%)
96.7
Duplicates removed (%)
22.6
Number of peaks
4121 (qval < 1E-05)
dm3
Number of total reads
17878115
Reads aligned (%)
97.1
Duplicates removed (%)
21.0
Number of peaks
4108 (qval < 1E-05)
Base call quality data from
DBCLS SRA