SRX024361
GSM569089: Jurkat H3K27me3 ChipSeq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K79me2

Cell type

Cell type Class
Blood
Cell type
Jurkat (Clone E6-1)
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Acute Lymphocytic

Attributes by original data submitter

Sample

source_name
T-ALL cell line
chip antibody
H3K79me2
antibody catalog number
AB3594
cell line
Jurkat E6-1
cell number
50 million
antibody manufacturer
Abcam

Sequenced DNA Library

library_name
GSM569089: Jurkat_H3K27me3_ChipSeq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
18837812
Reads aligned (%)
67.8
Duplicates removed (%)
12.0
Number of peaks
7884 (qval < 1E-05)

hg19

Number of total reads
18837812
Reads aligned (%)
67.7
Duplicates removed (%)
12.1
Number of peaks
7912 (qval < 1E-05)

Base call quality data from DBCLS SRA