SRX024360
GSM569088: RNAP2 Jurkat ChipSeq 8WG16

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
RNA polymerase
Antigen
RNA polymerase II

Cell type

Cell type Class
Blood
Cell type
Jurkat (Clone E6-1)
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Acute Lymphocytic

Attributes by original data submitter

Sample

source_name
T-ALL cell line
chip antibody
RNA Pol II (8WG16)
antibody catalog number
MMS-126R
cell line
Jurkat E6-1
cell number
30 million
antibody manufacturer
Covance

Sequenced DNA Library

library_name
GSM569088: RNAP2 Jurkat_ChipSeq 8WG16
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
22101474
Reads aligned (%)
42.7
Duplicates removed (%)
22.5
Number of peaks
472 (qval < 1E-05)

hg19

Number of total reads
22101474
Reads aligned (%)
42.0
Duplicates removed (%)
24.0
Number of peaks
525 (qval < 1E-05)

Base call quality data from DBCLS SRA