Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Blood
Cell type
Jurkat (Clone E6-1)
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Acute Lymphocytic

Attributes by original data submitter

Sample

source_name
T-ALL cell line
chip antibody
None
cell line
Jurkat E6-1

Sequenced DNA Library

library_name
GSM569086: WCE_Jurkat
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

hg38

Number of total reads
21983319
Reads aligned (%)
65.5
Duplicates removed (%)
2.7
Number of peaks
367 (qval < 1E-05)

hg19

Number of total reads
21983319
Reads aligned (%)
64.7
Duplicates removed (%)
4.0
Number of peaks
463 (qval < 1E-05)

Base call quality data from DBCLS SRA