SRX024357
GSM569085: H3K4m3 ChipSeq Jurkat

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Blood
Cell type
Jurkat (Clone E6-1)
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Acute Lymphocytic

Attributes by original data submitter

Sample

source_name
T-ALL cell line
chip antibody
H3K4me3
antibody catalog number
AB8580
cell line
Jurkat E6-1
cell number
10 million
antibody manufacturer
Abcam

Sequenced DNA Library

library_name
GSM569085: H3K4m3 ChipSeq Jurkat
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
16031124
Reads aligned (%)
67.4
Duplicates removed (%)
4.3
Number of peaks
7526 (qval < 1E-05)

hg19

Number of total reads
16031124
Reads aligned (%)
66.6
Duplicates removed (%)
5.3
Number of peaks
7466 (qval < 1E-05)

Base call quality data from DBCLS SRA