SRX023720
GSM566972: mm9-Bcell-KO-unstim-PTIP

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Paxip1

Cell type

Cell type Class
Blood
Cell type
B cells
NA
NA

Attributes by original data submitter

Sample

source_name
mouse B cells
strain
Cd19-cre X Paxip flox/flox
age
6-14 weeks
tissue
spleen
cell type
B cells
genome/variation
PTIP-knockout
antibody
PTIP
treatment group
unstimulated

Sequenced DNA Library

library_name
GSM566972: mm9-Bcell-KO-unstim-PTIP
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
35153793
Reads aligned (%)
43.3
Duplicates removed (%)
9.6
Number of peaks
500 (qval < 1E-05)

mm9

Number of total reads
35153793
Reads aligned (%)
43.2
Duplicates removed (%)
9.7
Number of peaks
522 (qval < 1E-05)

Base call quality data from DBCLS SRA