SRX023663
GSM566169: H3K4me3 HeLa

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Uterus
Cell type
HeLa
Primary Tissue
Cervix
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
Human cervical carcinoma cell line
cell line
HeLa Kyoto cell line
sample type
Antibody H3K4me3 Diagenode (pAb-MEHAHS-024)
antibody
anti-H3K4me3
antibody manufacturer
Diagenode

Sequenced DNA Library

library_name
GSM566169: H3K4me3_HeLa
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
14816718
Reads aligned (%)
96.5
Duplicates removed (%)
17.9
Number of peaks
19022 (qval < 1E-05)

hg19

Number of total reads
14816718
Reads aligned (%)
96.2
Duplicates removed (%)
18.3
Number of peaks
19034 (qval < 1E-05)

Base call quality data from DBCLS SRA