Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
TRRAP

Cell type

Cell type Class
Uterus
Cell type
HeLa
Primary Tissue
Cervix
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
Human cervical carcinoma cell line
cell line
HeLa Kyoto cell line
sample type
Antibody GFP Abcam (ab290-050); HeLa cells stably transfected with TRRAP-GFP BAC
antibody
anti-GFP
antibody manufacturer
Abcam
transfection
TRRAP-GFP BAC

Sequenced DNA Library

library_name
GSM566158: TRRAP-GFP_HeLa rep1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

hg19

Number of total reads
10324691
Reads aligned (%)
71.7
Duplicates removed (%)
22.4
Number of peaks
2517 (qval < 1E-05)

hg38

Number of total reads
10324691
Reads aligned (%)
72.3
Duplicates removed (%)
22.0
Number of peaks
2515 (qval < 1E-05)

Base call quality data from DBCLS SRA