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For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: ETV1
wikigenes
PDBj
CellType: GIST48
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX023216
GSM558678: ETV1-ChIPSeq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
ETV1
Cell type
Cell type Class
Digestive tract
Cell type
GIST48
NA
NA
Attributes by original data submitter
Sample
source_name
GIST48 Cells, ChIP fraction
cell line
GIST
fraction
ChIP fraction
chip antibody
anti-ETV1 (Abcam Ab81086, lot#787879)
Sequenced DNA Library
library_name
GSM558678: ETV1-ChIPSeq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer II
Where can I get the processing logs?
Read processing pipeline
log
hg19
Number of total reads
24167255
Reads aligned (%)
50.8
Duplicates removed (%)
5.3
Number of peaks
12718 (qval < 1E-05)
hg38
Number of total reads
24167255
Reads aligned (%)
51.9
Duplicates removed (%)
4.1
Number of peaks
12665 (qval < 1E-05)
Base call quality data from
DBCLS SRA