SRX023216
GSM558678: ETV1-ChIPSeq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
ETV1

Cell type

Cell type Class
Digestive tract
Cell type
GIST48
NA
NA

Attributes by original data submitter

Sample

source_name
GIST48 Cells, ChIP fraction
cell line
GIST
fraction
ChIP fraction
chip antibody
anti-ETV1 (Abcam Ab81086, lot#787879)

Sequenced DNA Library

library_name
GSM558678: ETV1-ChIPSeq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg19

Number of total reads
24167255
Reads aligned (%)
50.8
Duplicates removed (%)
5.3
Number of peaks
12718 (qval < 1E-05)

hg38

Number of total reads
24167255
Reads aligned (%)
51.9
Duplicates removed (%)
4.1
Number of peaks
12665 (qval < 1E-05)

Base call quality data from DBCLS SRA