SRX023136
GSM563089: Control Input DNA sequencing for PRDM14

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
Embyonic stem cells
cell type
pluripotent and self-renewing cells
antibody
none, control input DNA

Sequenced DNA Library

library_name
GSM563089: Control_Input_DNA_sequencing_for_PRDM14
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
25091757
Reads aligned (%)
93.2
Duplicates removed (%)
1.9
Number of peaks
833 (qval < 1E-05)

hg19

Number of total reads
25091757
Reads aligned (%)
92.4
Duplicates removed (%)
3.1
Number of peaks
1002 (qval < 1E-05)

Base call quality data from DBCLS SRA