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Install and launch IGV before selecting data to visualize
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: PRDM14
wikigenes
PDBj
CellType: ES cells
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX023135
GSM563088: PRDM14 ChIPSeq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
PRDM14
Cell type
Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA
Attributes by original data submitter
Sample
source_name
Embyonic stem cells
cell type
pluripotent and self-renewing cells
antibody
custom made PRDM14
Sequenced DNA Library
library_name
GSM563088: PRDM14_ChIPSeq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer II
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
22299957
Reads aligned (%)
90.3
Duplicates removed (%)
5.2
Number of peaks
6121 (qval < 1E-05)
hg19
Number of total reads
22299957
Reads aligned (%)
89.0
Duplicates removed (%)
6.9
Number of peaks
6066 (qval < 1E-05)
Base call quality data from
DBCLS SRA