SRX023135
GSM563088: PRDM14 ChIPSeq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
PRDM14

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
Embyonic stem cells
cell type
pluripotent and self-renewing cells
antibody
custom made PRDM14

Sequenced DNA Library

library_name
GSM563088: PRDM14_ChIPSeq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
22299957
Reads aligned (%)
90.3
Duplicates removed (%)
5.2
Number of peaks
6121 (qval < 1E-05)

hg19

Number of total reads
22299957
Reads aligned (%)
89.0
Duplicates removed (%)
6.9
Number of peaks
6066 (qval < 1E-05)

Base call quality data from DBCLS SRA