Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Neural
Cell type
Cerebellum
MeSH Description
The part of brain that lies behind the BRAIN STEM in the posterior base of skull (CRANIAL FOSSA, POSTERIOR). It is also known as the "little brain" with convolutions similar to those of CEREBRAL CORTEX, inner white matter, and deep cerebellar nuclei. Its function is to coordinate voluntary movements, maintain balance, and learn motor skills.

Attributes by original data submitter

Sample

source_name
IgG.s_5
developmental stage
P5
tissue type
4 P5 cerebella (pooled)
genotype
Atoh1FLAG/FLAG
sequencing protocol
single-end, 37-mer sequencing
chip antibody
Rabbit IgG, Millipore, 12-371

Sequenced DNA Library

library_name
GSM549942: IgG.s_5
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

mm10

Number of total reads
14238148
Reads aligned (%)
71.2
Duplicates removed (%)
31.2
Number of peaks
168 (qval < 1E-05)

mm9

Number of total reads
14238148
Reads aligned (%)
71.1
Duplicates removed (%)
31.2
Number of peaks
166 (qval < 1E-05)

Base call quality data from DBCLS SRA