Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Neural
Cell type
Cerebellum
MeSH Description
The part of brain that lies behind the BRAIN STEM in the posterior base of skull (CRANIAL FOSSA, POSTERIOR). It is also known as the "little brain" with convolutions similar to those of CEREBRAL CORTEX, inner white matter, and deep cerebellar nuclei. Its function is to coordinate voluntary movements, maintain balance, and learn motor skills.

Attributes by original data submitter

Sample

source_name
Atoh1.control
developmental stage
P5
tissue type
4 P5 cerebella (pooled)
genotype
Atoh1FLAG/FLAG
chip antibody
none
sequencing protocol
single-end, 37-mer sequencing

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

mm10

Number of total reads
20283277
Reads aligned (%)
60.3
Duplicates removed (%)
10.5
Number of peaks
233 (qval < 1E-05)

mm9

Number of total reads
20283277
Reads aligned (%)
60.1
Duplicates removed (%)
10.5
Number of peaks
285 (qval < 1E-05)

Base call quality data from DBCLS SRA