SRX022746
GSM561056: S3 input DNA

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Cell line
Cell type
S3
Source
Oregon R
Developmental Stage
late embryonic stage

Attributes by original data submitter

Sample

source_name
S3 cells
cell line
S3 cell line
chip antibody
none

Sequenced DNA Library

library_name
GSM561056: S3_input_DNA
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

dm6

Number of total reads
9144494
Reads aligned (%)
83.7
Duplicates removed (%)
7.7
Number of peaks
1605 (qval < 1E-05)

dm3

Number of total reads
9144494
Reads aligned (%)
83.9
Duplicates removed (%)
6.3
Number of peaks
1519 (qval < 1E-05)

Base call quality data from DBCLS SRA