Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
Embyonic stem cells
chip antibody
None
antibody catalog number
None
strain
C57BL/6-129
cell type
V6.5 embryonic stem cells

Sequenced DNA Library

library_name
GSM560357: WCE in mES cells
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

mm10

Number of total reads
7344784
Reads aligned (%)
66.2
Duplicates removed (%)
6.7
Number of peaks
195 (qval < 1E-05)

mm9

Number of total reads
7344784
Reads aligned (%)
66.1
Duplicates removed (%)
7.0
Number of peaks
219 (qval < 1E-05)

Base call quality data from DBCLS SRA