SRX022579
GSM353653: tissue H3K4me3

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Prostate
Cell type
Prostate cancer cells
NA
NA

Attributes by original data submitter

Sample

source_name
tissue - metastatic prostate cancer tissue - Chromatin IP against H3K4me3

Sequenced DNA Library

library_name
GSM353653: tissue_H3K4me3
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
18891722
Reads aligned (%)
67.0
Duplicates removed (%)
6.8
Number of peaks
30324 (qval < 1E-05)

hg19

Number of total reads
18891722
Reads aligned (%)
66.6
Duplicates removed (%)
7.3
Number of peaks
30522 (qval < 1E-05)

Base call quality data from DBCLS SRA