SRX022578
GSM353652: tissue ERG

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
ERG

Cell type

Cell type Class
Prostate
Cell type
Prostate cancer cells
NA
NA

Attributes by original data submitter

Sample

source_name
tissue - metastatic prostate cancer tissue - Chromatin IP against ERG

Sequenced DNA Library

library_name
GSM353652: tissue_ERG
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
30451851
Reads aligned (%)
65.8
Duplicates removed (%)
10.6
Number of peaks
1256 (qval < 1E-05)

hg19

Number of total reads
30451851
Reads aligned (%)
65.0
Duplicates removed (%)
11.8
Number of peaks
1475 (qval < 1E-05)

Base call quality data from DBCLS SRA