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Install and launch IGV before selecting data to visualize
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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Analyze
For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: ERG
wikigenes
PDBj
CellType: RWPE-1
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX022575
GSM353649: RWPE+ERG ERG jy15
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
ERG
Cell type
Cell type Class
Prostate
Cell type
RWPE-1
Primary Tissue
Prostate
Tissue Diagnosis
Normal
Attributes by original data submitter
Sample
source_name
RWPE - ERG overexpression stable cell lline - Chromatin IP against ERG
Sequenced DNA Library
library_name
GSM353649: RWPE+ERG_ERG_jy15
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
11783484
Reads aligned (%)
30.6
Duplicates removed (%)
2.9
Number of peaks
1416 (qval < 1E-05)
hg19
Number of total reads
11783484
Reads aligned (%)
30.4
Duplicates removed (%)
3.2
Number of peaks
1438 (qval < 1E-05)
Base call quality data from
DBCLS SRA