Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
AR

Cell type

Cell type Class
Prostate
Cell type
VCaP
Primary Tissue
Prostate
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
VCaP - Ethanol - Chromatin IP against AR

Sequenced DNA Library

library_name
GSM353645: VCaP_ethl_AR_jy11
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg19

Number of total reads
14224422
Reads aligned (%)
31.0
Duplicates removed (%)
5.4
Number of peaks
127 (qval < 1E-05)

hg38

Number of total reads
14224422
Reads aligned (%)
31.4
Duplicates removed (%)
4.9
Number of peaks
119 (qval < 1E-05)

Base call quality data from DBCLS SRA