SRX022569
GSM353643: LNCaP ethl AR jy9

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
AR

Cell type

Cell type Class
Prostate
Cell type
LNCAP
Primary Tissue
Prostate
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
LNCaP - Ethanol - Chromatin IP against AR

Sequenced DNA Library

library_name
GSM353643: LNCaP_ethl_AR_jy9
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
12382969
Reads aligned (%)
17.9
Duplicates removed (%)
8.6
Number of peaks
1466 (qval < 1E-05)

hg19

Number of total reads
12382969
Reads aligned (%)
17.8
Duplicates removed (%)
8.7
Number of peaks
1488 (qval < 1E-05)

Base call quality data from DBCLS SRA