Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
AR

Cell type

Cell type Class
Prostate
Cell type
VCaP
Primary Tissue
Prostate
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
VCaP - siERG - Chromatin IP against AR

Sequenced DNA Library

library_name
GSM353638: VCaP_siERG_AR
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg19

Number of total reads
11067766
Reads aligned (%)
66.6
Duplicates removed (%)
7.0
Number of peaks
488 (qval < 1E-05)

hg38

Number of total reads
11067766
Reads aligned (%)
67.8
Duplicates removed (%)
6.1
Number of peaks
402 (qval < 1E-05)

Base call quality data from DBCLS SRA