Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Prostate
Cell type
LNCAP
Primary Tissue
Prostate
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
LnCaP - regular medium - Chromatin IP against H3K4me3

Sequenced DNA Library

library_name
GSM353626: LnCaP_regular_medium_H3K4me3
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg38

Number of total reads
19899747
Reads aligned (%)
63.2
Duplicates removed (%)
14.5
Number of peaks
26632 (qval < 1E-05)

hg19

Number of total reads
19899747
Reads aligned (%)
63.0
Duplicates removed (%)
14.7
Number of peaks
26878 (qval < 1E-05)

Base call quality data from DBCLS SRA