Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K36me3

Cell type

Cell type Class
Prostate
Cell type
VCaP
Primary Tissue
Prostate
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
VCaP - regular medium - Chromatin IP against H3K36me3

Sequenced DNA Library

library_name
GSM353624: VCaP_regular_medium_H3K36me3
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg38

Number of total reads
7449831
Reads aligned (%)
74.3
Duplicates removed (%)
4.4
Number of peaks
50 (qval < 1E-05)

hg19

Number of total reads
7449831
Reads aligned (%)
73.9
Duplicates removed (%)
4.7
Number of peaks
61 (qval < 1E-05)

Base call quality data from DBCLS SRA