SRX022483
GSM558908: Tbx5 [ChIP-seq]

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Cardiovascular
Cell type
HL-1
NA
NA

Attributes by original data submitter

Sample

source_name
HL-1 cells
strain
C57BL/6J
cell line
HL-1 cardiac muscle cell line
protocol
Tbx5 fbio ChIP
chip antibody
none

Sequenced DNA Library

library_name
GSM558908: Tbx5 [ChIP-seq]
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
17305027
Reads aligned (%)
73.0
Duplicates removed (%)
17.7
Number of peaks
39312 (qval < 1E-05)

mm9

Number of total reads
17305027
Reads aligned (%)
72.9
Duplicates removed (%)
17.9
Number of peaks
39275 (qval < 1E-05)

Base call quality data from DBCLS SRA