SRX022480
GSM558905: Mef2a [ChIP-seq]

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Cardiovascular
Cell type
HL-1
NA
NA

Attributes by original data submitter

Sample

source_name
HL-1 cells
strain
C57BL/6J
cell line
HL-1 cardiac muscle cell line
protocol
Mef2a fbio ChIP
chip antibody
none

Sequenced DNA Library

library_name
GSM558905: Mef2a [ChIP-seq]
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
29034285
Reads aligned (%)
84.8
Duplicates removed (%)
11.8
Number of peaks
1227 (qval < 1E-05)

mm9

Number of total reads
29034285
Reads aligned (%)
84.6
Duplicates removed (%)
11.9
Number of peaks
1249 (qval < 1E-05)

Base call quality data from DBCLS SRA