SRX022434
GSM558473: SMC4 HeLa M ChIPSeq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
SMC4

Cell type

Cell type Class
Uterus
Cell type
HeLa
Primary Tissue
Cervix
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
HeLa cells
cell line
HeLa cells
antibody
SMC4
antibody catalog
ab17958, A300-064A
antibody manufacturer
Abcam; Bethyl Laboratories, Inc.

Sequenced DNA Library

library_name
GSM558473: SMC4_HeLa_M_ChIPSeq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg19

Number of total reads
13437787
Reads aligned (%)
61.0
Duplicates removed (%)
32.5
Number of peaks
522 (qval < 1E-05)

hg38

Number of total reads
13437787
Reads aligned (%)
62.9
Duplicates removed (%)
31.0
Number of peaks
200 (qval < 1E-05)

Base call quality data from DBCLS SRA