SRX022433
GSM558470: PHF8 HeLa unsyn ChIPSeq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
PHF8

Cell type

Cell type Class
Uterus
Cell type
HeLa
Primary Tissue
Cervix
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
HeLa cells
cell line
HeLa cells
antibody
PHF8
antibody catalog
ab35471
antibody manufacturer
Abcam

Sequenced DNA Library

library_name
GSM558470: PHF8_HeLa_unsyn_ChIPSeq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg19

Number of total reads
21110423
Reads aligned (%)
23.1
Duplicates removed (%)
3.7
Number of peaks
6927 (qval < 1E-05)

hg38

Number of total reads
21110423
Reads aligned (%)
23.3
Duplicates removed (%)
3.0
Number of peaks
6904 (qval < 1E-05)

Base call quality data from DBCLS SRA