Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Tcf3

Cell type

Cell type Class
Blood
Cell type
T cells
NA
NA

Attributes by original data submitter

Sample

source_name
A12 (E2A-/- T cell)
strain
C57BL/6
cell type
double-positive T cell
chip antibody
E2A.E12(V-18) (sc-349)
transgenes
E47-ER
genetic background
E2A-/-

Sequenced DNA Library

library_name
GSM546539: A12-E2A-6h-E47ER-ChIP-Seq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

mm10

Number of total reads
3762129
Reads aligned (%)
91.4
Duplicates removed (%)
9.1
Number of peaks
3479 (qval < 1E-05)

mm9

Number of total reads
3762129
Reads aligned (%)
91.2
Duplicates removed (%)
9.6
Number of peaks
3586 (qval < 1E-05)

Base call quality data from DBCLS SRA