SRX021892
GSM546538: A12-H3K4me1-6h-E47ER-ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me1

Cell type

Cell type Class
Blood
Cell type
T cells
NA
NA

Attributes by original data submitter

Sample

source_name
A12 (E2A-/- T cell)
strain
C57BL/6
cell type
double-positive T cell
chip antibody
H3K4me1 (ab8895)
transgenes
E47-ER
genetic background
E2A-/-

Sequenced DNA Library

library_name
GSM546538: A12-H3K4me1-6h-E47ER-ChIP-Seq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
11386148
Reads aligned (%)
91.3
Duplicates removed (%)
4.5
Number of peaks
226 (qval < 1E-05)

mm9

Number of total reads
11386148
Reads aligned (%)
91.2
Duplicates removed (%)
4.7
Number of peaks
266 (qval < 1E-05)

Base call quality data from DBCLS SRA