SRX021890
GSM546536: E2AKO-E2A-6h-E47ER-ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Tcf3

Cell type

Cell type Class
Blood
Cell type
Pro-B cells
NA
NA

Attributes by original data submitter

Sample

source_name
E2A-/- pre-pro-B cell
strain
C57BL/6
cell type
pre-pro-B cell
chip antibody
E2A.E12(V-18) (sc-349)
transgenes
E47-ER
genetic background
E2A-/-

Sequenced DNA Library

library_name
GSM546536: E2AKO-E2A-6h-E47ER-ChIP-Seq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
4239667
Reads aligned (%)
64.6
Duplicates removed (%)
6.8
Number of peaks
3337 (qval < 1E-05)

mm9

Number of total reads
4239667
Reads aligned (%)
64.5
Duplicates removed (%)
7.3
Number of peaks
3337 (qval < 1E-05)

Base call quality data from DBCLS SRA