SRX021880
GSM546526: RAG1KO-CTCF-ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Ctcf

Cell type

Cell type Class
Blood
Cell type
Pro-B cells
NA
NA

Attributes by original data submitter

Sample

source_name
RAG1-/- pro-B cell
strain
C57BL/6
cell type
pro-B cell
chip antibody
CTCF (07-729), DAM1421463
transgenes
none
genetic background
RAG1-/-

Sequenced DNA Library

library_name
GSM546526: RAG1KO-CTCF-ChIP-Seq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
7457881
Reads aligned (%)
79.5
Duplicates removed (%)
12.4
Number of peaks
28932 (qval < 1E-05)

mm9

Number of total reads
7457881
Reads aligned (%)
79.3
Duplicates removed (%)
12.7
Number of peaks
28954 (qval < 1E-05)

Base call quality data from DBCLS SRA