SRX021879
GSM546525: RAG1KO-FOXO1-ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Foxo1

Cell type

Cell type Class
Blood
Cell type
Pro-B cells
NA
NA

Attributes by original data submitter

Sample

source_name
RAG1-/- pro-B cell
strain
C57BL/6
cell type
pro-B cell
chip antibody
FKHR (H-128) (sc-11350)
transgenes
none
genetic background
RAG1-/-

Sequenced DNA Library

library_name
GSM546525: RAG1KO-FOXO1-ChIP-Seq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
27397319
Reads aligned (%)
53.4
Duplicates removed (%)
11.4
Number of peaks
750 (qval < 1E-05)

mm9

Number of total reads
27397319
Reads aligned (%)
53.1
Duplicates removed (%)
11.6
Number of peaks
801 (qval < 1E-05)

Base call quality data from DBCLS SRA