SRX021812
GSM552236: HPC7 IgG

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Pluripotent stem cell
Cell type
mESC derived haematopoietic progenitor
NA
NA

Attributes by original data submitter

Sample

source_name
HPC-7 Cell Line
cell type
Early haematopoietic cell line derived from ES cells

Sequenced DNA Library

library_name
GSM552236: HPC7_IgG
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
9739836
Reads aligned (%)
91.0
Duplicates removed (%)
8.8
Number of peaks
893 (qval < 1E-05)

mm9

Number of total reads
9739836
Reads aligned (%)
90.9
Duplicates removed (%)
9.0
Number of peaks
905 (qval < 1E-05)

Base call quality data from DBCLS SRA