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Install and launch IGV before selecting data to visualize
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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Analyze
For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Spi1
wikigenes
PDBj
CellType: MEL
ATCC
MeSH
RIKEN BRC
SRX021431
GSM545884: MEL PU.1 B1
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
Spi1
Cell type
Cell type Class
Blood
Cell type
MEL
Tissue
Blood
Lineage
cellLine
Description
Leukemia (K562 analog)
Attributes by original data submitter
Sample
source_name
Murine erythroleukemia (MEL) cells stably transfected with Gata-1 fused to ER
chip antibody
anti-PU.1 (T-21)
antibody vendor
Santa Cruz
Sequenced DNA Library
library_name
GSM545884: MEL_PU.1_B1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer II
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
3521306
Reads aligned (%)
92.7
Duplicates removed (%)
11.4
Number of peaks
1413 (qval < 1E-05)
mm9
Number of total reads
3521306
Reads aligned (%)
92.5
Duplicates removed (%)
12.1
Number of peaks
1435 (qval < 1E-05)
Base call quality data from
DBCLS SRA