Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
POU5F1

Cell type

Cell type Class
Pluripotent stem cell
Cell type
hESC H9
NA
NA

Attributes by original data submitter

Sample

source_name
Embyonic stem cells
chip antibody
Oct4
antibody manufacturer
Santa Cruz
antibody catalog number
SC-8628
cell type
H9

Sequenced DNA Library

library_name
GSM545204: H9 Oct4 technical replicate 2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

hg19

Number of total reads
7388434
Reads aligned (%)
64.5
Duplicates removed (%)
4.4
Number of peaks
1847 (qval < 1E-05)

hg38

Number of total reads
7388434
Reads aligned (%)
65.2
Duplicates removed (%)
4.0
Number of peaks
1838 (qval < 1E-05)

Base call quality data from DBCLS SRA