SRX021070
GSM545203: H9 Oct4 technical replicate 1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
POU5F1

Cell type

Cell type Class
Pluripotent stem cell
Cell type
hESC H9
NA
NA

Attributes by original data submitter

Sample

source_name
Embyonic stem cells
chip antibody
Oct4
antibody manufacturer
Santa Cruz
antibody catalog number
SC-8628
cell type
H9

Sequenced DNA Library

library_name
GSM545203: H9 Oct4 technical replicate 1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
8176560
Reads aligned (%)
60.8
Duplicates removed (%)
5.6
Number of peaks
1411 (qval < 1E-05)

hg19

Number of total reads
8176560
Reads aligned (%)
60.3
Duplicates removed (%)
6.0
Number of peaks
1418 (qval < 1E-05)

Base call quality data from DBCLS SRA