SRX020958
GSM544726: 3T3-L1 6hr Input

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Embryonic fibroblast
Cell type
3T3-L1
Tissue
Embryo
Cell Type
Fibroblast

Attributes by original data submitter

Sample

source_name
6hr_Input
cell line
3T3-L1
developmental stage
6 hr after inducing differentiation
chip antibody
--

Sequenced DNA Library

library_name
GSM544726: 3T3-L1_6hr_Input
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
14850212
Reads aligned (%)
96.9
Duplicates removed (%)
15.9
Number of peaks
239 (qval < 1E-05)

mm9

Number of total reads
14850212
Reads aligned (%)
96.7
Duplicates removed (%)
16.0
Number of peaks
323 (qval < 1E-05)

Base call quality data from DBCLS SRA