SRX020938
GSM353632: VCaP regular medium H3K4me2

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me2

Cell type

Cell type Class
Prostate
Cell type
VCaP
Primary Tissue
Prostate
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
VCaP - regular medium - Chromatin IP against H3K4me2

Sequenced DNA Library

library_name
GSM353632: VCaP_regular_medium_H3K4me2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
8038243
Reads aligned (%)
77.5
Duplicates removed (%)
6.8
Number of peaks
9761 (qval < 1E-05)

hg19

Number of total reads
8038243
Reads aligned (%)
77.2
Duplicates removed (%)
7.0
Number of peaks
9728 (qval < 1E-05)

Base call quality data from DBCLS SRA